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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037554 through 18771 annotations produced 1 hits



DNApol-iota (DNApol-iota):

Annotation Number : CG7602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037554
Gbrowse : chr3R:4059228-4062524 (+) // 99.84 //
Probeset : 1636289_s_at
Accessions : protein= NP_649772; /// NP_731214;, nucleotide= NM_141515; /// NM_169207;
Interpro : 0003684 // damaged DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activit
FlyMine data for FBgn0037554.
BDGP gene expression has embryonic in situ data for DNApol-iota: 4 pix of staining in 1 body parts.
Homophila reports that CG7602 is a close match (5e-22) to human gene POLH;XPV (NP_006493), a gene associated with Xeroderma pigmentosum, variant type, 278750 (3).
BioGrid reports that CG7602 interacts with CG8159 CG32042 CG31204 .
TRiP has 1 RNAi stocks for FBgn0037554 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037554 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 ± 24 of 4 1.40Up
Head26 ± 24 of 4 0.60Down
Eye21 ± 34 of 4 0.47Down
Thoracicoabdominal ganglion39 ± 54 of 4 0.90None
Salivary gland39 ± 23 of 4 0.87None
Crop29 ± 01 of 4 0.70Down
Midgut22 ± 10 of 4 0.50Down
Tubule26 ± 03 of 4 0.60Down
Hindgut29 ± 23 of 4 0.70Down
Heart19 ± 34 of 4 0.44Down
Fat body24 ± 11 of 4 0.54Down
Ovary69 ± 34 of 4 1.50Up
Testis77 ± 54 of 4 1.70Up
Male accessory glands23 ± 21 of 4 0.50Down
Virgin spermatheca18 ± 32 of 4 0.42Down
Mated spermatheca23 ± 21 of 4 0.51Down
Adult carcass26 ± 20 of 4 0.60Down
Larval CNS43 ± 44 of 4 0.95None
Larval Salivary gland27 ± 24 of 4 0.61Down
Larval midgut22 ± 30 of 4 0.50Down
Larval tubule29 ± 24 of 4 0.60Down
Larval hindgut32 ± 22 of 4 0.71Down
Larval fat body30 ± 44 of 4 0.70Down
Larval trachea33 ± 104 of 4 0.74None
Larval carcass32 ± 21 of 4 0.70Down
S2 cells (growing)83 ± 44 of 4 1.83Up
Whole fly45 ± 24 of 4

Looking for FBgn0037554. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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