FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037556 through 18771 annotations produced 1 hits

(CG9636):

Annotation Number : CG9636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037556
Gbrowse : chr3R:4066465-4069514 (-) // 100.0 //
Probeset : 1640558_a_at
Accessions : protein= NP_649774; /// NP_731215; /// NP_731216;, nucleotide= NM_141517; /// NM_169208; /// NM_169209;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037556.
BDGP gene expression has embryonic in situ data for CG9636: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037556 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037556 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	549 ± 8	4 of 4	4.00	Up
Head	223 ± 21	4 of 4	1.60	Up
Eye	230 ± 12	4 of 4	1.68	Up
Thoracicoabdominal ganglion	504 ± 4	4 of 4	3.70	Up
Salivary gland	141 ± 14	4 of 4	1.03	None
Crop	93 ± 4	4 of 4	0.70	Down
Midgut	61 ± 2	4 of 4	0.50	Down
Tubule	72 ± 1	4 of 4	0.50	Down
Hindgut	77 ± 5	4 of 4	0.60	Down
Heart	67 ± 0	4 of 4	0.50	Down
Fat body	58 ± 9	4 of 4	0.42	Down
Ovary	368 ± 14	4 of 4	2.70	Up
Testis	89 ± 0	4 of 4	0.70	Down
Male accessory glands	218 ± 6	4 of 4	1.60	Up
Virgin spermatheca	88 ± 6	4 of 4	0.64	Down
Mated spermatheca	106 ± 3	4 of 4	0.78	Down
Adult carcass	91 ± 7	4 of 4	0.70	Down
Larval CNS	577 ± 33	4 of 4	4.21	Up
Larval Salivary gland	129 ± 3	4 of 4	0.95	None
Larval midgut	50 ± 4	4 of 4	0.37	Down
Larval tubule	85 ± 3	4 of 4	0.60	Down
Larval hindgut	94 ± 2	4 of 4	0.69	Down
Larval fat body	84 ± 6	4 of 4	0.60	Down
Larval trachea	118 ± 3	4 of 4	0.86	Down
Larval carcass	162 ± 16	4 of 4	1.19	None
S2 cells (growing)	269 ± 12	4 of 4	1.97	Up
Whole fly	136 ± 1	4 of 4

Looking for FBgn0037556. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720