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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037560 through 18771 annotations produced 1 hits



CG18228 (CR18228):

Annotation Number : CG18228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037560
Gbrowse : chr3R:4086588-4087272 (-) // 100.0 //
Probeset : 1635469_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0037560.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 14 of 4 0.80None
Head180 84 of 4 2.40Up
Eye214 94 of 4 2.89Up
Thoracicoabdominal ganglion96 34 of 4 1.30Up
Salivary gland496 54 of 4 6.69Up
Crop414 84 of 4 5.60Up
Midgut272 104 of 4 3.70Up
Tubule346 384 of 4 4.70Up
Hindgut309 94 of 4 4.20Up
Heart413 384 of 4 5.58Up
Fat body114 164 of 4 1.55Up
Ovary17 12 of 4 0.20Down
Testis36 44 of 4 0.50Down
Male accessory glands479 234 of 4 6.50Up
Virgin spermatheca222 74 of 4 2.99Up
Mated spermatheca284 294 of 4 3.83Up
Adult carcass144 64 of 4 2.00Up
Larval CNS7 30 of 4 0.11Down
Larval Salivary gland80 64 of 4 1.09None
Larval midgut211 54 of 4 2.85Up
Larval tubule266 104 of 4 3.60Up
Larval hindgut151 64 of 4 2.04Up
Larval fat body29 24 of 4 0.40Down
Larval trachea260 474 of 4 3.51Up
Larval carcass94 34 of 4 1.28Up
S2 cells (growing)237 134 of 4 3.20Up
Whole fly74 64 of 4

Looking for FBgn0037560. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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