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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037562 through 18771 annotations produced 1 hits



(CG11671):

Annotation Number : CG11671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037562
Gbrowse : chr3R:4113660-4114340 (+) // 100.0 //
Probeset : 1632882_at
Accessions : protein= NP_649778;, nucleotide= NM_141521;
FlyMine data for FBgn0037562.
BDGP gene expression has embryonic in situ data for CG11671: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037562 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head5 ± 20 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland4 ± 00 of 4 0.02Down
Crop1 ± 00 of 4 0.00Down
Midgut2354 ± 1104 of 411.40Up
Tubule29 ± 92 of 4 0.10Down
Hindgut262 ± 324 of 4 1.30None
Heart7 ± 20 of 4 0.03Down
Fat body7 ± 40 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca31 ± 112 of 4 0.15Down
Mated spermatheca18 ± 81 of 4 0.09Down
Adult carcass5 ± 20 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut225 ± 294 of 4 1.09None
Larval tubule10 ± 32 of 4 0.10Down
Larval hindgut119 ± 144 of 4 0.58None
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea3 ± 20 of 4 0.02Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)446 ± 104 of 4 2.17Up
Whole fly206 ± 404 of 4

Looking for FBgn0037562. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime