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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037566 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L1 (mRpL1):

Annotation Number : CG7494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037566
Gbrowse : chr3R:4127163-4128493 (+) // 100.0 //
Probeset : 1628481_at
Accessions : protein= NP_524275;, nucleotide= NM_079551;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0037566.
BDGP gene expression has embryonic in situ data for mRpL1: 13 pix of staining in 8 body parts.
VDRC has 5 RNAi stocks for FBgn0037566 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 54 of 4 1.20Up
Head142 94 of 4 0.60Down
Eye97 24 of 4 0.43Down
Thoracicoabdominal ganglion284 74 of 4 1.30Up
Salivary gland196 114 of 4 0.87None
Crop137 54 of 4 0.60Down
Midgut150 74 of 4 0.70Down
Tubule246 84 of 4 1.10Up
Hindgut209 54 of 4 0.90Down
Heart129 34 of 4 0.57Down
Fat body158 214 of 4 0.70Down
Ovary398 44 of 4 1.80Up
Testis57 34 of 4 0.30Down
Male accessory glands135 104 of 4 0.60Down
Virgin spermatheca124 114 of 4 0.55Down
Mated spermatheca134 74 of 4 0.59Down
Adult carcass137 54 of 4 0.60Down
Larval CNS196 44 of 4 0.87Down
Larval Salivary gland138 34 of 4 0.61Down
Larval midgut135 54 of 4 0.60Down
Larval tubule87 34 of 4 0.40Down
Larval hindgut230 164 of 4 1.02None
Larval fat body63 64 of 4 0.30Down
Larval trachea167 164 of 4 0.74Down
Larval carcass148 204 of 4 0.65Down
S2 cells (growing)246 114 of 4 1.09None
Whole fly227 24 of 4

Looking for FBgn0037566. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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