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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037569 through 18771 annotations produced 1 hits



tex (tex):

Annotation Number : CG9615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037569
Gbrowse : chr3R:4133169-4134344 (-) // 100.0 //
Probeset : 1637038_at
Accessions : protein= NP_649784;, nucleotide= NM_141527;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0037569.
BDGP gene expression has embryonic in situ data for CG9615: 30 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0037569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 34 of 4 0.50Down
Head32 ± 11 of 4 0.50Down
Eye29 ± 14 of 4 0.44Down
Thoracicoabdominal ganglion36 ± 14 of 4 0.50Down
Salivary gland37 ± 40 of 4 0.56Down
Crop37 ± 44 of 4 0.60Down
Midgut35 ± 22 of 4 0.50Down
Tubule29 ± 13 of 4 0.40Down
Hindgut25 ± 01 of 4 0.40Down
Heart71 ± 34 of 4 1.06None
Fat body29 ± 60 of 4 0.45Down
Ovary112 ± 44 of 4 1.70Up
Testis53 ± 34 of 4 0.80Down
Male accessory glands71 ± 54 of 4 1.10None
Virgin spermatheca51 ± 21 of 4 0.77Down
Mated spermatheca48 ± 13 of 4 0.72Down
Adult carcass34 ± 30 of 4 0.50Down
Larval CNS179 ± 174 of 4 2.68Up
Larval Salivary gland89 ± 34 of 4 1.33Up
Larval midgut25 ± 11 of 4 0.38Down
Larval tubule32 ± 24 of 4 0.50Down
Larval hindgut32 ± 14 of 4 0.48Down
Larval fat body48 ± 24 of 4 0.70Down
Larval trachea100 ± 114 of 4 1.50Up
Larval carcass52 ± 34 of 4 0.79Down
S2 cells (growing)100 ± 14 of 4 1.51Up
Whole fly67 ± 24 of 4

Looking for FBgn0037569. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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