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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037571 through 18771 annotations produced 1 hits



(CG11694):

Annotation Number : CG11694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037571
Gbrowse : chr3R:4136924-4137807 (-) // 100.0 //
Probeset : 1623574_at
Accessions : protein= NP_649786;, nucleotide= NM_141529;
FlyMine data for FBgn0037571.
BDGP gene expression has embryonic in situ data for CG11694: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037571 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head3 00 of 4 0.20Down
Eye2 10 of 4 0.13Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland10 30 of 4 0.58None
Crop2 00 of 4 0.10Down
Midgut6 20 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut5 20 of 4 0.30Down
Heart4 00 of 4 0.23Down
Fat body7 10 of 4 0.38Down
Ovary3 10 of 4 0.20Down
Testis227 64 of 412.10Up
Male accessory glands8 20 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.35Down
Mated spermatheca4 10 of 4 0.25Down
Adult carcass2 00 of 4 0.10Down
Larval CNS1 10 of 4 0.07Down
Larval Salivary gland9 30 of 4 0.49None
Larval midgut11 00 of 4 0.62Down
Larval tubule7 10 of 4 0.40Down
Larval hindgut6 10 of 4 0.35Down
Larval fat body43 181 of 4 2.30None
Larval trachea2 20 of 4 0.13Down
Larval carcass2 00 of 4 0.13Down
S2 cells (growing)6 00 of 4 0.33Down
Whole fly18 20 of 4

Looking for FBgn0037571. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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