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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037574 through 18771 annotations produced 1 hits



CG9613 (Coq2):

Annotation Number : CG9613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037574
Gbrowse : chr3R:4140505-4142217 (-) // 100.0 //
Probeset : 1625564_at
Accessions : protein= NP_649789;, nucleotide= NM_141532;
Pathway : 0005666 // DNA-directed RNA polymerase III complex // inferred from sequence or structural similarity /// 0005736 // DNA
Interpro : 0003899 // DNA-directed RNA polymerase activity // inferred from sequence or structural similarity /// 0004659 // prenyl
FlyMine data for FBgn0037574.
BDGP gene expression has embryonic in situ data for CG9613: 4 pix of staining in 1 body parts.
Homophila reports that CG9613 is a close match (1e-100) to human gene COQ2 (NP_056512), a gene associated with Coenzyme Q10 deficiency, 607426 (3).
TRiP has 1 RNAi stocks for FBgn0037574 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 44 of 4 0.80None
Head45 34 of 4 0.50Down
Eye34 14 of 4 0.40Down
Thoracicoabdominal ganglion42 14 of 4 0.50Down
Salivary gland44 104 of 4 0.52Down
Crop54 34 of 4 0.60Down
Midgut40 44 of 4 0.50Down
Tubule42 24 of 4 0.50Down
Hindgut35 24 of 4 0.40Down
Heart32 14 of 4 0.37Down
Fat body41 34 of 4 0.48Down
Ovary196 44 of 4 2.30Up
Testis72 64 of 4 0.80None
Male accessory glands54 34 of 4 0.60Down
Virgin spermatheca24 24 of 4 0.28Down
Mated spermatheca35 34 of 4 0.41Down
Adult carcass46 44 of 4 0.50Down
Larval CNS37 64 of 4 0.43Down
Larval Salivary gland36 54 of 4 0.42Down
Larval midgut31 34 of 4 0.37Down
Larval tubule21 14 of 4 0.30Down
Larval hindgut35 34 of 4 0.41Down
Larval fat body30 23 of 4 0.30Down
Larval trachea23 44 of 4 0.27Down
Larval carcass28 24 of 4 0.32Down
S2 cells (growing)72 34 of 4 0.83None
Whole fly86 94 of 4

Looking for FBgn0037574. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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