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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037577 through 18771 annotations produced 1 hits



(CG7443):

Annotation Number : CG7443
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037577
Gbrowse : chr3R:4150056-4150764 (+) // 100.0 //
Probeset : 1639723_at
Accessions : protein= NP_649791;, nucleotide= NM_141534;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037577.
BioGrid reports that CG7443 interacts with CG8933 .
VDRC has 3 RNAi stocks for FBgn0037577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye2 11 of 4 0.01Down
Thoracicoabdominal ganglion5 01 of 4 0.00Down
Salivary gland620 234 of 4 2.53Up
Crop12 23 of 4 0.10Down
Midgut9 12 of 4 0.00Down
Tubule4 00 of 4 0.00Down
Hindgut6 11 of 4 0.00Down
Heart3 00 of 4 0.01Down
Fat body6 32 of 4 0.03Down
Ovary109 144 of 4 0.40Down
Testis17 14 of 4 0.10Down
Male accessory glands32 44 of 4 0.10Down
Virgin spermatheca109 364 of 4 0.44Down
Mated spermatheca34 234 of 4 0.14Down
Adult carcass67 274 of 4 0.30Down
Larval CNS3 22 of 4 0.01Down
Larval Salivary gland6 12 of 4 0.03Down
Larval midgut9 12 of 4 0.04Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut4 12 of 4 0.02Down
Larval fat body6 10 of 4 0.00Down
Larval trachea4 20 of 4 0.02Down
Larval carcass4 00 of 4 0.02Down
S2 cells (growing)5 01 of 4 0.02Down
Whole fly245 344 of 4

Looking for FBgn0037577. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime