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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037583 through 18771 annotations produced 1 hits



(CG9684):

Annotation Number : CG9684
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037583
Gbrowse : chr3R:4185679-4188269 (-) // 100.0 //
Probeset : 1634601_at
Accessions : protein= NP_649797;, nucleotide= NM_141540;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0037583.
BioGrid reports that CG9684 interacts with CG9684 .
TRiP has 1 RNAi stocks for FBgn0037583 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037583 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 24 of 4 0.10Down
Head54 44 of 4 0.30Down
Eye53 44 of 4 0.28Down
Thoracicoabdominal ganglion48 24 of 4 0.30Down
Salivary gland118 84 of 4 0.62Down
Crop81 44 of 4 0.40Down
Midgut61 64 of 4 0.30Down
Tubule93 74 of 4 0.50Down
Hindgut74 44 of 4 0.40Down
Heart61 44 of 4 0.32Down
Fat body81 64 of 4 0.42Down
Ovary498 104 of 4 2.60Up
Testis94 14 of 4 0.50Down
Male accessory glands203 64 of 4 1.10None
Virgin spermatheca88 74 of 4 0.46Down
Mated spermatheca97 54 of 4 0.51Down
Adult carcass67 24 of 4 0.40Down
Larval CNS138 94 of 4 0.72Down
Larval Salivary gland186 24 of 4 0.97None
Larval midgut55 34 of 4 0.29Down
Larval tubule97 64 of 4 0.50Down
Larval hindgut108 64 of 4 0.56Down
Larval fat body70 24 of 4 0.40Down
Larval trachea187 164 of 4 0.98None
Larval carcass92 54 of 4 0.48Down
S2 cells (growing)148 24 of 4 0.77Down
Whole fly191 34 of 4

Looking for FBgn0037583. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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