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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037603 through 18771 annotations produced 1 hits



(CG11753):

Annotation Number : CG11753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037603
Gbrowse : chr3R:4478737-4479576 (+) // 100.0 //
Probeset : 1630057_at
Accessions : protein= NP_649809;, nucleotide= NM_141552;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037603.
BioGrid reports that CG11753 interacts with CG9090 CG40127 CG7808 CG1524 CG1527 Dmel CG17162 .
VDRC has 3 RNAi stocks for FBgn0037603 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 ± 24 of 4 1.40Up
Head191 ± 64 of 4 1.60Up
Eye340 ± 124 of 4 2.76Up
Thoracicoabdominal ganglion156 ± 54 of 4 1.30Up
Salivary gland315 ± 194 of 4 2.56Up
Crop250 ± 84 of 4 2.00Up
Midgut226 ± 34 of 4 1.80Up
Tubule276 ± 64 of 4 2.20Up
Hindgut223 ± 54 of 4 1.80Up
Heart199 ± 84 of 4 1.62Up
Fat body120 ± 64 of 4 0.98None
Ovary158 ± 44 of 4 1.30Up
Testis55 ± 34 of 4 0.50Down
Male accessory glands373 ± 24 of 4 3.00Up
Virgin spermatheca161 ± 44 of 4 1.31Up
Mated spermatheca153 ± 114 of 4 1.24None
Adult carcass135 ± 54 of 4 1.10None
Larval CNS148 ± 54 of 4 1.20Up
Larval Salivary gland714 ± 114 of 4 5.79Up
Larval midgut190 ± 44 of 4 1.54Up
Larval tubule230 ± 44 of 4 1.90Up
Larval hindgut180 ± 84 of 4 1.46Up
Larval fat body124 ± 124 of 4 1.00None
Larval trachea273 ± 344 of 4 2.22Up
Larval carcass162 ± 74 of 4 1.31Up
S2 cells (growing)307 ± 64 of 4 2.49Up
Whole fly123 ± 44 of 4

Looking for FBgn0037603. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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