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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037606 through 18771 annotations produced 1 hits


Annotation Number : CG8032
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037606
Gbrowse : chr3R:4490084-4493076 (+) // 100.0 //
Probeset : 1631092_at
Accessions : protein= NP_649811;, nucleotide= NM_141554;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037606.
BDGP gene expression has embryonic in situ data for CG8032: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037606 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 34 of 4 1.70Up
Head93 44 of 4 0.90None
Eye72 44 of 4 0.67Down
Thoracicoabdominal ganglion216 74 of 4 2.00Up
Salivary gland92 70 of 4 0.86None
Crop93 84 of 4 0.90None
Midgut114 60 of 4 1.10None
Tubule100 84 of 4 0.90None
Hindgut108 54 of 4 1.00None
Heart119 24 of 4 1.10Up
Fat body57 44 of 4 0.53Down
Ovary240 44 of 4 2.20Up
Testis46 24 of 4 0.40Down
Male accessory glands33 23 of 4 0.30Down
Virgin spermatheca58 54 of 4 0.54Down
Mated spermatheca60 14 of 4 0.56Down
Adult carcass71 44 of 4 0.70Down
Larval CNS113 94 of 4 1.05None
Larval Salivary gland77 54 of 4 0.72Down
Larval midgut62 34 of 4 0.58Down
Larval tubule63 44 of 4 0.60Down
Larval hindgut84 54 of 4 0.78Down
Larval fat body72 34 of 4 0.70Down
Larval trachea55 64 of 4 0.51Down
Larval carcass99 64 of 4 0.92None
S2 cells (growing)72 24 of 4 0.67Down
Whole fly108 34 of 4

Looking for FBgn0037606. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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