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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037607 through 18771 annotations produced 1 hits



transketolase (CG8036):

Annotation Number : CG8036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037607
Gbrowse : chr3R:4493725-4499453 (+) // 100.0 //
Probeset : 1627910_s_at
Accessions : protein= NP_649812; /// NP_731263; /// NP_731264;, nucleotide= NM_141555; /// NM_169231; /// NM_169232;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004802 // transketolase activity // inferred f
FlyMine data for FBgn0037607.
BDGP gene expression has embryonic in situ data for CG8036: 27 pix of staining in 18 body parts.
BioGrid reports that CG8036 interacts with CG9021 .
TRiP has 1 RNAi stocks for FBgn0037607 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037607 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain258 ± 54 of 4 0.20Down
Head1443 ± 1174 of 4 1.20None
Eye935 ± 674 of 4 0.76Down
Thoracicoabdominal ganglion292 ± 84 of 4 0.20Down
Salivary gland1098 ± 504 of 4 0.89None
Crop2069 ± 704 of 4 1.70Up
Midgut1371 ± 984 of 4 1.10None
Tubule4837 ± 2694 of 4 3.90Up
Hindgut1529 ± 414 of 4 1.20Up
Heart2367 ± 1214 of 4 1.93Up
Fat body3299 ± 4774 of 4 2.68Up
Ovary1061 ± 224 of 4 0.90None
Testis892 ± 194 of 4 0.70Down
Male accessory glands1064 ± 124 of 4 0.90None
Virgin spermatheca3696 ± 1484 of 4 3.01Up
Mated spermatheca3164 ± 1694 of 4 2.58Up
Adult carcass2766 ± 564 of 4 2.30Up
Larval CNS1021 ± 804 of 4 0.83None
Larval Salivary gland1489 ± 864 of 4 1.21None
Larval midgut526 ± 444 of 4 0.43Down
Larval tubule750 ± 504 of 4 0.60Down
Larval hindgut662 ± 184 of 4 0.54Down
Larval fat body927 ± 1144 of 4 0.80None
Larval trachea1393 ± 1064 of 4 1.13None
Larval carcass667 ± 394 of 4 0.54Down
S2 cells (growing)983 ± 184 of 4 0.80None
Whole fly1228 ± 884 of 4

Looking for FBgn0037607. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime