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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037610 through 18771 annotations produced 1 hits



(CG8043):

Annotation Number : CG8043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037610
Gbrowse : chr3R:4502638-4503955 (+) // 100.0 //
Probeset : 1638215_at
Accessions : protein= NP_649814;, nucleotide= NM_141557;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004047 // aminomethyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // infe
FlyMine data for FBgn0037610.
VDRC has 2 RNAi stocks for FBgn0037610 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 24 of 4 0.30Down
Head57 ± 34 of 4 0.30Down
Eye49 ± 14 of 4 0.23Down
Thoracicoabdominal ganglion87 ± 24 of 4 0.40Down
Salivary gland121 ± 94 of 4 0.55Down
Crop57 ± 54 of 4 0.30Down
Midgut69 ± 24 of 4 0.30Down
Tubule67 ± 14 of 4 0.30Down
Hindgut69 ± 24 of 4 0.30Down
Heart67 ± 44 of 4 0.31Down
Fat body59 ± 94 of 4 0.27Down
Ovary180 ± 44 of 4 0.80Down
Testis1648 ± 534 of 4 7.50Up
Male accessory glands90 ± 44 of 4 0.40Down
Virgin spermatheca47 ± 34 of 4 0.21Down
Mated spermatheca53 ± 34 of 4 0.24Down
Adult carcass97 ± 34 of 4 0.40Down
Larval CNS48 ± 54 of 4 0.22Down
Larval Salivary gland84 ± 34 of 4 0.38Down
Larval midgut62 ± 54 of 4 0.28Down
Larval tubule56 ± 44 of 4 0.30Down
Larval hindgut80 ± 54 of 4 0.37Down
Larval fat body174 ± 614 of 4 0.80None
Larval trachea43 ± 74 of 4 0.20Down
Larval carcass45 ± 44 of 4 0.20Down
S2 cells (growing)85 ± 24 of 4 0.39Down
Whole fly220 ± 114 of 4

Looking for FBgn0037610. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime