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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037611 through 18771 annotations produced 1 hits



(CG11755):

Annotation Number : CG11755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037611
Gbrowse : chr3R:4504006-4504471 (+) // 100.0 //
Probeset : 1623726_at
Accessions : protein= NP_649815;, nucleotide= NM_141558;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037611.
BioGrid reports that CG11755 interacts with CG7185 .
VDRC has 3 RNAi stocks for FBgn0037611 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain65 34 of 4 0.90None
Head42 14 of 4 0.60Down
Eye40 04 of 4 0.54Down
Thoracicoabdominal ganglion76 14 of 4 1.00None
Salivary gland60 63 of 4 0.81None
Crop54 14 of 4 0.70Down
Midgut35 14 of 4 0.50Down
Tubule30 24 of 4 0.40Down
Hindgut43 14 of 4 0.60Down
Heart49 14 of 4 0.66Down
Fat body35 24 of 4 0.47Down
Ovary159 44 of 4 2.10Up
Testis34 14 of 4 0.50Down
Male accessory glands47 14 of 4 0.60Down
Virgin spermatheca49 64 of 4 0.66Down
Mated spermatheca61 44 of 4 0.82None
Adult carcass39 14 of 4 0.50Down
Larval CNS99 104 of 4 1.32Up
Larval Salivary gland38 64 of 4 0.52Down
Larval midgut22 23 of 4 0.30Down
Larval tubule31 14 of 4 0.40Down
Larval hindgut34 34 of 4 0.46Down
Larval fat body31 14 of 4 0.40Down
Larval trachea41 64 of 4 0.56Down
Larval carcass42 24 of 4 0.56Down
S2 cells (growing)63 34 of 4 0.85None
Whole fly74 44 of 4

Looking for FBgn0037611. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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