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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037615 through 18771 annotations produced 1 hits



(CG8116):

Annotation Number : CG11760
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037614
Gbrowse : chr3R:4543943-4547051 (+) // 100.0 //
Probeset : 1632757_a_at
Accessions : protein= NP_001163553; /// NP_001163554; /// NP_649818; /// NP_649819;, nucleotide= NM_001170082; /// NM_001170083; /// NM_141561; /// NM_141562;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037614.
BioGrid reports that CG11760 interacts with CG17568 CG4035 .
TRiP has 1 RNAi stocks for FBgn0037614 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain302 ± 124 of 4 2.10Up
Head152 ± 74 of 4 1.10None
Eye143 ± 34 of 4 1.01None
Thoracicoabdominal ganglion236 ± 134 of 4 1.70Up
Salivary gland306 ± 204 of 4 2.14Up
Crop269 ± 54 of 4 1.90Up
Midgut52 ± 24 of 4 0.40Down
Tubule80 ± 24 of 4 0.60Down
Hindgut175 ± 64 of 4 1.20Up
Heart220 ± 164 of 4 1.54Up
Fat body263 ± 224 of 4 1.84Up
Ovary182 ± 74 of 4 1.30Up
Testis20 ± 24 of 4 0.10Down
Male accessory glands87 ± 74 of 4 0.60Down
Virgin spermatheca161 ± 164 of 4 1.13None
Mated spermatheca212 ± 64 of 4 1.49Up
Adult carcass256 ± 94 of 4 1.80Up
Larval CNS186 ± 94 of 4 1.31Up
Larval Salivary gland176 ± 114 of 4 1.23None
Larval midgut50 ± 34 of 4 0.35Down
Larval tubule84 ± 34 of 4 0.60Down
Larval hindgut170 ± 84 of 4 1.20None
Larval fat body80 ± 74 of 4 0.60Down
Larval trachea109 ± 204 of 4 0.77Down
Larval carcass402 ± 244 of 4 2.82Up
S2 cells (growing)185 ± 64 of 4 1.30Up
Whole fly142 ± 84 of 4

Looking for FBgn0037615. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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