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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037617 through 18771 annotations produced 1 hits


Annotation Number : CG8145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037617
Gbrowse : chr3R:4548945-4550434 (+) // 98.65 //
Probeset : 1633861_at
Accessions : protein= NP_649821;, nucleotide= NM_141564;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037617.
BDGP gene expression has embryonic in situ data for CG8145: 6 pix of staining in 1 body parts.
Homophila reports that CG8145 is a close match (4e-11) to human gene IK1;IKZF1;LYF1;ZNFN1A1 (NP_006051), a gene associated with Leukemia, acute lymphoblastic (3).
BioGrid reports that CG8145 interacts with CG8493 CG9902 .
TRiP has 1 RNAi stocks for FBgn0037617 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037617 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 24 of 4 1.70Up
Head47 24 of 4 1.10None
Eye80 64 of 4 1.88Up
Thoracicoabdominal ganglion55 14 of 4 1.30None
Salivary gland42 43 of 4 0.99None
Crop38 34 of 4 0.90None
Midgut38 24 of 4 0.90None
Tubule357 264 of 4 8.40Up
Hindgut46 34 of 4 1.10None
Heart39 24 of 4 0.93None
Fat body50 194 of 4 1.17None
Ovary39 24 of 4 0.90None
Testis76 34 of 4 1.80Up
Male accessory glands38 34 of 4 0.90None
Virgin spermatheca45 24 of 4 1.07None
Mated spermatheca56 94 of 4 1.33None
Adult carcass36 22 of 4 0.90None
Larval CNS99 324 of 4 2.33Up
Larval Salivary gland103 24 of 4 2.42Up
Larval midgut36 24 of 4 0.86None
Larval tubule1093 304 of 425.60Up
Larval hindgut56 24 of 4 1.33Up
Larval fat body32 34 of 4 0.80None
Larval trachea115 104 of 4 2.70Up
Larval carcass43 14 of 4 1.02None
S2 cells (growing)118 34 of 4 2.78Up
Whole fly42 44 of 4

Looking for FBgn0037617. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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