FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037620 through 18771 annotations produced 1 hits

ranshi (ranshi):

Annotation Number : CG9793
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037620
Gbrowse : chr3R:4554173-4555382 (-) // 100.0 //
Probeset : 1636870_at
Accessions : protein= NP_649824;, nucleotide= NM_141567;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037620.
Homophila reports that CG9793 is a close match (3e-11) to human gene TNDM1;ZFP57 (NP_001103279), a gene associated with Diabetes mellitus, transient neonatal, 1, 601410 (3).
VDRC has 1 RNAi stocks for FBgn0037620 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	31 ± 1	4 of 4	0.80	None
Head	17 ± 3	4 of 4	0.40	Down
Eye	24 ± 1	4 of 4	0.64	Down
Thoracicoabdominal ganglion	32 ± 1	4 of 4	0.80	None
Salivary gland	35 ± 1	4 of 4	0.93	None
Crop	24 ± 1	4 of 4	0.60	Down
Midgut	47 ± 3	4 of 4	1.20	None
Tubule	37 ± 3	4 of 4	1.00	None
Hindgut	19 ± 1	4 of 4	0.50	Down
Heart	18 ± 1	4 of 4	0.47	Down
Fat body	20 ± 2	3 of 4	0.55	Down
Ovary	94 ± 3	4 of 4	2.50	Up
Testis	10 ± 0	2 of 4	0.30	Down
Male accessory glands	21 ± 2	1 of 4	0.60	Down
Virgin spermatheca	22 ± 1	4 of 4	0.60	Down
Mated spermatheca	23 ± 0	3 of 4	0.62	Down
Adult carcass	13 ± 4	0 of 4	0.30	Down
Larval CNS	26 ± 1	4 of 4	0.69	Down
Larval Salivary gland	15 ± 1	2 of 4	0.40	Down
Larval midgut	23 ± 1	0 of 4	0.63	Down
Larval tubule	21 ± 1	4 of 4	0.60	Down
Larval hindgut	18 ± 1	2 of 4	0.47	Down
Larval fat body	22 ± 3	2 of 4	0.60	Down
Larval trachea	23 ± 2	0 of 4	0.60	Down
Larval carcass	19 ± 2	2 of 4	0.52	Down
S2 cells (growing)	17 ± 1	3 of 4	0.47	Down
Whole fly	38 ± 2	4 of 4

Looking for FBgn0037620. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720