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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037625 through 18771 annotations produced 1 hits



(CG11768):

Annotation Number : CG11768
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037625
Gbrowse : chr3R:4579830-4581391 (-) // 100.0 //
Probeset : 1623390_at
Accessions : protein= NP_649829;, nucleotide= NM_141572;
FlyMine data for FBgn0037625.
BioGrid reports that CG11768 interacts with CG4254 CG4759 CG5738 .
VDRC has 3 RNAi stocks for FBgn0037625 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 24 of 4 5.70Up
Head17 ± 22 of 4 1.80Up
Eye12 ± 14 of 4 1.28None
Thoracicoabdominal ganglion76 ± 64 of 4 8.10Up
Salivary gland13 ± 40 of 4 1.40None
Crop9 ± 10 of 4 1.00None
Midgut6 ± 31 of 4 0.70None
Tubule6 ± 00 of 4 0.70Down
Hindgut7 ± 11 of 4 0.80None
Heart1 ± 10 of 4 0.20Down
Fat body10 ± 70 of 4 1.13None
Ovary4 ± 10 of 4 0.50Down
Testis5 ± 21 of 4 0.60None
Male accessory glands6 ± 20 of 4 0.70None
Virgin spermatheca6 ± 10 of 4 0.70None
Mated spermatheca10 ± 10 of 4 1.09None
Adult carcass20 ± 52 of 4 2.20None
Larval CNS9 ± 21 of 4 0.96None
Larval Salivary gland11 ± 10 of 4 1.23None
Larval midgut13 ± 21 of 4 1.47None
Larval tubule7 ± 20 of 4 0.80None
Larval hindgut9 ± 00 of 4 0.97None
Larval fat body11 ± 20 of 4 1.20None
Larval trachea3 ± 30 of 4 0.38Down
Larval carcass11 ± 00 of 4 1.26Up
S2 cells (growing)9 ± 10 of 4 0.96None
Whole fly9 ± 00 of 4

Looking for FBgn0037625. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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