Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037626 through 18771 annotations produced 1 hits


(CG8236):

Annotation Number : CG8236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037626
Gbrowse : chr3R:4595115-4596866 (+) // 100.0 //
Probeset : 1641525_at
Accessions : protein= NP_649830;, nucleotide= NM_141573;
FlyMine data for FBgn0037626.
VDRC has 3 RNAi stocks for FBgn0037626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion8 ± 20 of 4 0.20Down
Salivary gland8 ± 30 of 4 0.18Down
Crop4 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.09Down
Fat body2 ± 10 of 4 0.06Down
Ovary3 ± 10 of 4 0.10Down
Testis540 ± 134 of 411.50Up
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.08Down
Adult carcass3 ± 00 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body51 ± 262 of 4 1.10None
Larval trachea9 ± 81 of 4 0.20Down
Larval carcass2 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 10 of 4 0.06Down
Whole fly47 ± 14 of 4

Looking for FBgn0037626. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime