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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037627 through 18771 annotations produced 1 hits



(CG13318):

Annotation Number : CG13318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037627
Gbrowse : chr3R:4596968-4598408 (-) // 100.0 //
Probeset : 1629491_at
Accessions : protein= NP_649831;, nucleotide= NM_141574;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037627.
BDGP gene expression has embryonic in situ data for CG13318: 14 pix of staining in 5 body parts.
Homophila reports that CG13318 is a close match (1e-11) to human gene ADN;CFD (NP_001919), a gene associated with Complement factor D deficiency (3).
VDRC has 1 RNAi stocks for FBgn0037627 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head83 ± 44 of 4 2.80Up
Eye53 ± 94 of 4 1.81None
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.26Down
Crop8 ± 20 of 4 0.30Down
Midgut6 ± 20 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut13 ± 10 of 4 0.50Down
Heart2 ± 00 of 4 0.07Down
Fat body3 ± 10 of 4 0.13Down
Ovary2 ± 00 of 4 0.10Down
Testis6 ± 10 of 4 0.20Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca204 ± 364 of 4 6.94Up
Mated spermatheca340 ± 514 of 411.56Up
Adult carcass13 ± 10 of 4 0.40Down
Larval CNS3 ± 20 of 4 0.11Down
Larval Salivary gland8 ± 20 of 4 0.28Down
Larval midgut13 ± 10 of 4 0.44Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut16 ± 10 of 4 0.56None
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea19 ± 14 of 4 0.68None
Larval carcass6 ± 10 of 4 0.24Down
S2 cells (growing)11 ± 10 of 4 0.38Down
Whole fly29 ± 42 of 4

Looking for FBgn0037627. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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