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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037630 through 18771 annotations produced 1 hits



CG11775 (Ir85a):

Annotation Number : CG11775
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037630
Gbrowse : chr3R:4620405-4622367 (+) // 100.0 //
Probeset : 1623920_at
Accessions : protein= NP_649833;, nucleotide= NM_141576;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004970 // ionotropic glutamate receptor activity // inferred from electronic annotation /// 0005234 // extracellular-gl
FlyMine data for FBgn0037630.
BioGrid reports that CG11775 interacts with CG7285 .
VDRC has 1 RNAi stocks for FBgn0037630 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.10None
Head3 ± 10 of 4 1.10None
Eye2 ± 10 of 4 0.69None
Thoracicoabdominal ganglion3 ± 00 of 4 0.80None
Salivary gland13 ± 30 of 4 3.77None
Crop1 ± 00 of 4 0.50None
Midgut15 ± 20 of 4 4.30Up
Tubule3 ± 00 of 4 1.00None
Hindgut6 ± 10 of 4 1.70None
Heart0 ± 00 of 4 0.17Down
Fat body2 ± 10 of 4 0.74None
Ovary1 ± 00 of 4 0.30None
Testis20 ± 14 of 4 5.60Up
Male accessory glands1 ± 00 of 4 0.40None
Virgin spermatheca0 ± 00 of 4 0.19Down
Mated spermatheca1 ± 00 of 4 0.33None
Adult carcass4 ± 20 of 4 1.30None
Larval CNS1 ± 00 of 4 0.39None
Larval Salivary gland1 ± 00 of 4 0.40None
Larval midgut10 ± 20 of 4 2.94None
Larval tubule6 ± 20 of 4 1.80None
Larval hindgut2 ± 00 of 4 0.73None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea1 ± 00 of 4 0.34None
Larval carcass1 ± 00 of 4 0.31None
S2 cells (growing)1 ± 00 of 4 0.32None
Whole fly3 ± 00 of 4

Looking for FBgn0037630. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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