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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037633 through 18771 annotations produced 1 hits



(CG9839):

Annotation Number : CG9839
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037633
Gbrowse : chr3R:4629192-4631352 (-) // 100.0 //
Probeset : 1632554_at
Accessions : protein= NP_649836;, nucleotide= NM_141579;
FlyMine data for FBgn0037633.
VDRC has 2 RNAi stocks for FBgn0037633 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 34 of 4 1.50Up
Head56 24 of 4 0.90None
Eye75 64 of 4 1.19None
Thoracicoabdominal ganglion90 54 of 4 1.40Up
Salivary gland36 34 of 4 0.57Down
Crop64 44 of 4 1.00None
Midgut26 24 of 4 0.40Down
Tubule23 14 of 4 0.40Down
Hindgut30 34 of 4 0.50Down
Heart29 24 of 4 0.47Down
Fat body19 93 of 4 0.30Down
Ovary117 34 of 4 1.80Up
Testis4 11 of 4 0.10Down
Male accessory glands44 44 of 4 0.70Down
Virgin spermatheca19 24 of 4 0.31Down
Mated spermatheca29 34 of 4 0.46Down
Adult carcass29 13 of 4 0.50Down
Larval CNS173 104 of 4 2.73Up
Larval Salivary gland64 34 of 4 1.01None
Larval midgut19 04 of 4 0.30Down
Larval tubule20 14 of 4 0.30Down
Larval hindgut32 34 of 4 0.51Down
Larval fat body8 10 of 4 0.10Down
Larval trachea94 104 of 4 1.48Up
Larval carcass34 44 of 4 0.54Down
S2 cells (growing)89 74 of 4 1.41Up
Whole fly63 54 of 4

Looking for FBgn0037633. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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