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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037634 through 18771 annotations produced 1 hits


Annotation Number : CG8359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037634
Gbrowse : chr3R:4632056-4633303 (+) // 100.0 //
Probeset : 1632927_at
Accessions : protein= NP_649837;, nucleotide= NM_141580;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0037634.
BDGP gene expression has embryonic in situ data for CG8359: 8 pix of staining in 1 body parts.
BioGrid reports that CG8359 interacts with CG9949 .
TRiP has 1 RNAi stocks for FBgn0037634 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037634 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 14 of 4 0.50Down
Head41 24 of 4 0.40Down
Eye29 24 of 4 0.28Down
Thoracicoabdominal ganglion54 24 of 4 0.50Down
Salivary gland50 63 of 4 0.48Down
Crop62 34 of 4 0.60Down
Midgut40 04 of 4 0.40Down
Tubule35 24 of 4 0.30Down
Hindgut40 14 of 4 0.40Down
Heart24 14 of 4 0.24Down
Fat body49 34 of 4 0.47Down
Ovary220 84 of 4 2.10Up
Testis155 124 of 4 1.50Up
Male accessory glands52 44 of 4 0.50Down
Virgin spermatheca44 04 of 4 0.42Down
Mated spermatheca52 24 of 4 0.50Down
Adult carcass28 04 of 4 0.30Down
Larval CNS138 124 of 4 1.32Up
Larval Salivary gland46 24 of 4 0.44Down
Larval midgut39 22 of 4 0.37Down
Larval tubule45 24 of 4 0.40Down
Larval hindgut49 04 of 4 0.47Down
Larval fat body60 53 of 4 0.60Down
Larval trachea62 34 of 4 0.60Down
Larval carcass40 04 of 4 0.39Down
S2 cells (growing)106 44 of 4 1.01None
Whole fly105 64 of 4

Looking for FBgn0037634. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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