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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037637 through 18771 annotations produced 1 hits


Annotation Number : CG9836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037637
Gbrowse : chr3R:4648563-4649895 (-) // 100.0 //
Probeset : 1624986_at
Accessions : protein= NP_649840;, nucleotide= NM_141583;
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from elect
FlyMine data for FBgn0037637.
BDGP gene expression has embryonic in situ data for CG9836: 19 pix of staining in 7 body parts.
Homophila reports that CG9836 is a close match (2e-52) to human gene HML;ISCU (NP_055116), a gene associated with Myopathy with exercise intolerance, Swedish type, 255125 (3).
VDRC has 2 RNAi stocks for FBgn0037637 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1705 284 of 4 2.00Up
Head1393 454 of 4 1.60Up
Eye1239 394 of 4 1.43Up
Thoracicoabdominal ganglion2832 594 of 4 3.30Up
Salivary gland1104 274 of 4 1.27Up
Crop746 184 of 4 0.90None
Midgut1062 114 of 4 1.20None
Tubule1722 584 of 4 2.00Up
Hindgut1052 184 of 4 1.20None
Heart1138 254 of 4 1.31Up
Fat body874 344 of 4 1.01None
Ovary280 64 of 4 0.30Down
Testis401 214 of 4 0.50Down
Male accessory glands645 484 of 4 0.70Down
Virgin spermatheca1120 254 of 4 1.29Up
Mated spermatheca1098 384 of 4 1.26Up
Adult carcass2504 534 of 4 2.90Up
Larval CNS495 304 of 4 0.57Down
Larval Salivary gland370 54 of 4 0.43Down
Larval midgut691 424 of 4 0.80None
Larval tubule635 184 of 4 0.70Down
Larval hindgut721 404 of 4 0.83None
Larval fat body389 234 of 4 0.40Down
Larval trachea452 344 of 4 0.52Down
Larval carcass539 304 of 4 0.62Down
S2 cells (growing)562 164 of 4 0.65Down
Whole fly868 694 of 4

Looking for FBgn0037637. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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