FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037638 through 18771 annotations produced 1 hits

(CG8379):

Annotation Number : CG8379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037638
Gbrowse : chr3R:4650153-4653007 (+) // 100.0 //
Probeset : 1633784_at
Accessions : protein= NP_649841; /// NP_996185;, nucleotide= NM_141584; /// NM_206463;
FlyMine data for FBgn0037638.
BDGP gene expression has embryonic in situ data for CG8379: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0037638 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	104 ± 2	4 of 4	0.90	None
Head	100 ± 3	4 of 4	0.80	None
Eye	157 ± 6	4 of 4	1.33	Up
Thoracicoabdominal ganglion	118 ± 2	4 of 4	1.00	None
Salivary gland	221 ± 15	4 of 4	1.87	Up
Crop	129 ± 3	4 of 4	1.10	None
Midgut	142 ± 1	4 of 4	1.20	Up
Tubule	185 ± 3	4 of 4	1.60	Up
Hindgut	132 ± 2	4 of 4	1.10	None
Heart	158 ± 8	4 of 4	1.34	Up
Fat body	145 ± 9	4 of 4	1.23	Up
Ovary	226 ± 2	4 of 4	1.90	Up
Testis	271 ± 13	4 of 4	2.30	Up
Male accessory glands	232 ± 4	4 of 4	2.00	Up
Virgin spermatheca	120 ± 3	4 of 4	1.02	None
Mated spermatheca	137 ± 4	4 of 4	1.16	Up
Adult carcass	104 ± 2	4 of 4	0.90	None
Larval CNS	135 ± 3	4 of 4	1.15	None
Larval Salivary gland	277 ± 5	4 of 4	2.35	Up
Larval midgut	149 ± 5	4 of 4	1.26	Up
Larval tubule	175 ± 3	4 of 4	1.50	Up
Larval hindgut	184 ± 3	4 of 4	1.56	Up
Larval fat body	170 ± 15	4 of 4	1.40	Up
Larval trachea	144 ± 22	4 of 4	1.22	None
Larval carcass	143 ± 5	4 of 4	1.22	Up
S2 cells (growing)	254 ± 3	4 of 4	2.15	Up
Whole fly	118 ± 6	4 of 4

Looking for FBgn0037638. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720