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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037643 through 18771 annotations produced 1 hits



CG11963 (skap):

Annotation Number : CG11963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037643
Gbrowse : chr3R:4764404-4768750 (+) // 100.0 //
Probeset : 1630433_at
Accessions : protein= NP_001097713; /// NP_001163558; /// NP_001163559; /// NP_649846;, nucleotide= NM_001104243; /// NM_001170087; /// NM_001170088; /// NM_141589;
Pathway : 0005813 // centrosome // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from direc
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004775 // succinate-CoA ligase (ADP-forming) a
FlyMine data for FBgn0037643.
Homophila reports that CG11963 is a close match (3e-138) to human gene SUCLA2 (NP_003841), a gene associated with Mitochondrial DNA depletion syndrome, enceophalomyopathic form, with methylmalonic aciduria, 612073 (3).
BioGrid reports that CG11963 interacts with CG13549 .
VDRC has 4 RNAi stocks for FBgn0037643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain882 194 of 4 1.00None
Head1464 344 of 4 1.70Up
Eye861 234 of 4 0.98None
Thoracicoabdominal ganglion798 204 of 4 0.90None
Salivary gland1420 454 of 4 1.62Up
Crop874 264 of 4 1.00None
Midgut596 154 of 4 0.70Down
Tubule881 384 of 4 1.00None
Hindgut1768 334 of 4 2.00Up
Heart1992 1314 of 4 2.27Up
Fat body2161 2044 of 4 2.47Up
Ovary361 114 of 4 0.40Down
Testis1727 514 of 4 2.00Up
Male accessory glands212 114 of 4 0.20Down
Virgin spermatheca1688 824 of 4 1.93Up
Mated spermatheca1319 1304 of 4 1.51Up
Adult carcass1650 1084 of 4 1.90Up
Larval CNS441 464 of 4 0.50Down
Larval Salivary gland623 304 of 4 0.71Down
Larval midgut371 144 of 4 0.42Down
Larval tubule502 284 of 4 0.60Down
Larval hindgut1022 384 of 4 1.17None
Larval fat body680 314 of 4 0.80None
Larval trachea606 364 of 4 0.69Down
Larval carcass970 294 of 4 1.11None
S2 cells (growing)616 234 of 4 0.70Down
Whole fly876 774 of 4

Looking for FBgn0037643. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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