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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037644 through 18771 annotations produced 1 hits



(CG11964):

Annotation Number : CG11964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037644
Gbrowse : chr3R:4768399-4770726 (-) // 100.0 //
Probeset : 1628505_at
Accessions : protein= NP_649847;, nucleotide= NM_141590;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0037644.
BDGP gene expression has embryonic in situ data for CG11964: 4 pix of staining in 1 body parts.
BioGrid reports that CG11964 interacts with CG12135 CG8617 CG1391 CG4303 CG5164 .
VDRC has 2 RNAi stocks for FBgn0037644 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 34 of 4 0.80None
Head35 24 of 4 0.60Down
Eye30 34 of 4 0.52Down
Thoracicoabdominal ganglion66 24 of 4 1.10None
Salivary gland50 44 of 4 0.88None
Crop44 34 of 4 0.80None
Midgut19 13 of 4 0.30Down
Tubule31 14 of 4 0.50Down
Hindgut36 24 of 4 0.60Down
Heart37 34 of 4 0.64Down
Fat body38 124 of 4 0.66Down
Ovary37 24 of 4 0.60Down
Testis68 84 of 4 1.20None
Male accessory glands53 24 of 4 0.90None
Virgin spermatheca76 54 of 4 1.32Up
Mated spermatheca76 34 of 4 1.31Up
Adult carcass42 24 of 4 0.70Down
Larval CNS62 54 of 4 1.09None
Larval Salivary gland41 34 of 4 0.71Down
Larval midgut32 24 of 4 0.56Down
Larval tubule32 24 of 4 0.60Down
Larval hindgut28 14 of 4 0.50Down
Larval fat body60 74 of 4 1.00None
Larval trachea45 64 of 4 0.79None
Larval carcass38 14 of 4 0.66Down
S2 cells (growing)41 24 of 4 0.72Down
Whole fly58 34 of 4

Looking for FBgn0037644. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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