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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037645 through 18771 annotations produced 1 hits



(CG11966):

Annotation Number : CG11966
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037645
Gbrowse : chr3R:4777793-4779557 (-) // 100.0 //
Probeset : 1639570_at
Accessions : protein= NP_649848;, nucleotide= NM_141591;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037645.
BDGP gene expression has embryonic in situ data for CG11966: 27 pix of staining in 15 body parts.
Homophila reports that CG11966 is a close match (9e-12) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
VDRC has 1 RNAi stocks for FBgn0037645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.90None
Head5 ± 10 of 4 1.20None
Eye4 ± 00 of 4 0.88None
Thoracicoabdominal ganglion3 ± 10 of 4 0.80None
Salivary gland13 ± 31 of 4 2.98None
Crop6 ± 11 of 4 1.40None
Midgut11 ± 10 of 4 2.50Up
Tubule3 ± 10 of 4 0.80None
Hindgut4 ± 01 of 4 1.10None
Heart6 ± 10 of 4 1.39None
Fat body10 ± 20 of 4 2.27Up
Ovary3 ± 10 of 4 0.80None
Testis4 ± 11 of 4 0.90None
Male accessory glands11 ± 21 of 4 2.40None
Virgin spermatheca5 ± 11 of 4 1.18None
Mated spermatheca6 ± 10 of 4 1.51None
Adult carcass4 ± 20 of 4 1.00None
Larval CNS4 ± 04 of 4 0.99None
Larval Salivary gland4 ± 10 of 4 1.08None
Larval midgut8 ± 20 of 4 1.88None
Larval tubule8 ± 13 of 4 2.00None
Larval hindgut6 ± 21 of 4 1.31None
Larval fat body5 ± 20 of 4 1.20None
Larval trachea3 ± 22 of 4 0.76None
Larval carcass4 ± 10 of 4 0.88None
S2 cells (growing)5 ± 11 of 4 1.19None
Whole fly4 ± 10 of 4

Looking for FBgn0037645. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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