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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037648 through 18771 annotations produced 1 hits



PROPPIN-3 (CG11975):

Annotation Number : CG11975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037648
Gbrowse : chr3R:4818978-4820561 (+) // 100.0 //
Probeset : 1632813_at
Accessions : protein= NP_649853;, nucleotide= NM_141596;
FlyMine data for FBgn0037648.
VDRC has 3 RNAi stocks for FBgn0037648 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain176 ± 34 of 4 1.30None
Head154 ± 164 of 4 1.10None
Eye156 ± 104 of 4 1.15None
Thoracicoabdominal ganglion127 ± 34 of 4 0.90None
Salivary gland194 ± 114 of 4 1.43Up
Crop111 ± 34 of 4 0.80None
Midgut269 ± 24 of 4 2.00Up
Tubule245 ± 114 of 4 1.80Up
Hindgut177 ± 54 of 4 1.30Up
Heart167 ± 54 of 4 1.23None
Fat body192 ± 104 of 4 1.41Up
Ovary172 ± 34 of 4 1.30Up
Testis66 ± 54 of 4 0.50Down
Male accessory glands175 ± 44 of 4 1.30Up
Virgin spermatheca134 ± 54 of 4 0.98None
Mated spermatheca130 ± 44 of 4 0.95None
Adult carcass134 ± 184 of 4 1.00None
Larval CNS108 ± 104 of 4 0.80None
Larval Salivary gland164 ± 104 of 4 1.20None
Larval midgut285 ± 214 of 4 2.09Up
Larval tubule394 ± 54 of 4 2.90Up
Larval hindgut159 ± 174 of 4 1.17None
Larval fat body221 ± 204 of 4 1.60Up
Larval trachea126 ± 34 of 4 0.93None
Larval carcass136 ± 224 of 4 1.00None
S2 cells (growing)189 ± 14 of 4 1.39Up
Whole fly136 ± 114 of 4

Looking for FBgn0037648. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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