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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037652 through 18771 annotations produced 1 hits



(CG11980):

Annotation Number : CG11980
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037652
Gbrowse : chr3R:4829739-4831053 (+) // 100.0 //
Probeset : 1637597_a_at
Accessions : protein= NP_649857; /// NP_731302; /// NP_731303;, nucleotide= NM_141600; /// NM_169250; /// NM_169251;
FlyMine data for FBgn0037652.
BDGP gene expression has embryonic in situ data for CG11980: 19 pix of staining in 10 body parts.
VDRC has 1 RNAi stocks for FBgn0037652 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 24 of 4 0.50Down
Head128 34 of 4 0.50Down
Eye162 54 of 4 0.63Down
Thoracicoabdominal ganglion101 24 of 4 0.40Down
Salivary gland257 74 of 4 0.99None
Crop237 34 of 4 0.90None
Midgut172 44 of 4 0.70Down
Tubule188 154 of 4 0.70Down
Hindgut217 44 of 4 0.80Down
Heart202 74 of 4 0.78Down
Fat body203 164 of 4 0.78Down
Ovary408 104 of 4 1.60Up
Testis57 34 of 4 0.20Down
Male accessory glands389 124 of 4 1.50Up
Virgin spermatheca164 84 of 4 0.63Down
Mated spermatheca202 44 of 4 0.78Down
Adult carcass148 14 of 4 0.60Down
Larval CNS260 194 of 4 1.00None
Larval Salivary gland359 74 of 4 1.38Up
Larval midgut120 54 of 4 0.46Down
Larval tubule184 54 of 4 0.70Down
Larval hindgut229 114 of 4 0.88None
Larval fat body177 224 of 4 0.70Down
Larval trachea258 364 of 4 0.99None
Larval carcass240 214 of 4 0.93None
S2 cells (growing)170 34 of 4 0.65Down
Whole fly260 114 of 4

Looking for FBgn0037652. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime