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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037654 through 18771 annotations produced 1 hits



(CG11983):

Annotation Number : CG11983
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037654
Gbrowse : chr3R:4834156-4835714 (+) // 100.0 //
Probeset : 1632387_at
Accessions : protein= NP_649860;, nucleotide= NM_141603;
FlyMine data for FBgn0037654.
VDRC has 2 RNAi stocks for FBgn0037654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.90None
Head12 12 of 4 0.40Down
Eye16 14 of 4 0.58Down
Thoracicoabdominal ganglion22 14 of 4 0.80Down
Salivary gland4 00 of 4 0.15Down
Crop17 10 of 4 0.60Down
Midgut2 00 of 4 0.10Down
Tubule3 00 of 4 0.10Down
Hindgut7 20 of 4 0.30Down
Heart2 00 of 4 0.10Down
Fat body3 20 of 4 0.12Down
Ovary2 00 of 4 0.10Down
Testis362 54 of 412.50Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca2 10 of 4 0.09Down
Adult carcass2 00 of 4 0.10Down
Larval CNS24 34 of 4 0.85None
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut1 00 of 4 0.04Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut2 10 of 4 0.09Down
Larval fat body36 193 of 4 1.20None
Larval trachea3 30 of 4 0.12Down
Larval carcass1 00 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.07Down
Whole fly29 14 of 4

Looking for FBgn0037654. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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