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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037656 through 18771 annotations produced 1 hits



(CG11986):

Annotation Number : CG11986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037656
Gbrowse : chr3R:4841167-4842544 (+) // 100.0 //
Probeset : 1638463_at
Accessions : protein= NP_649862;, nucleotide= NM_141605;
FlyMine data for FBgn0037656.
BDGP gene expression has embryonic in situ data for CG11986: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 0.80None
Head10 ± 13 of 4 0.30Down
Eye14 ± 13 of 4 0.44Down
Thoracicoabdominal ganglion34 ± 14 of 4 1.00None
Salivary gland27 ± 14 of 4 0.81None
Crop28 ± 14 of 4 0.80None
Midgut30 ± 14 of 4 0.90None
Tubule58 ± 14 of 4 1.70Up
Hindgut21 ± 24 of 4 0.60Down
Heart19 ± 34 of 4 0.58Down
Fat body10 ± 32 of 4 0.32Down
Ovary69 ± 04 of 4 2.10Up
Testis86 ± 34 of 4 2.60Up
Male accessory glands12 ± 22 of 4 0.40Down
Virgin spermatheca6 ± 01 of 4 0.21Down
Mated spermatheca6 ± 02 of 4 0.19Down
Adult carcass15 ± 04 of 4 0.50Down
Larval CNS43 ± 24 of 4 1.30Up
Larval Salivary gland25 ± 04 of 4 0.76None
Larval midgut24 ± 04 of 4 0.72Down
Larval tubule99 ± 24 of 4 3.00Up
Larval hindgut31 ± 34 of 4 0.93None
Larval fat body26 ± 82 of 4 0.80None
Larval trachea27 ± 14 of 4 0.82None
Larval carcass13 ± 23 of 4 0.40Down
S2 cells (growing)33 ± 14 of 4 1.01None
Whole fly33 ± 34 of 4

Looking for FBgn0037656. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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