FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037657 through 18771 annotations produced 1 hits

Hyrax (hyx):

Annotation Number : CG11990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037657
Gbrowse : chr3R:4865509-4868076 (+) // 100.0 //
Probeset : 1634550_at
Accessions : protein= NP_001163564; /// NP_649863;, nucleotide= NM_001170093; /// NM_141606;
Pathway : 0043234 // protein complex // inferred from physical interaction
Interpro : 0008134 // transcription factor binding // inferred from physical interaction /// 0016829 // lyase activity // inferred
FlyMine data for FBgn0037657.
BDGP gene expression has embryonic in situ data for CG11990: 20 pix of staining in 7 body parts.
Homophila reports that CG11990 is a close match (1e-148) to human gene C1orf28;HRPT2 (NP_078805), a gene associated with Hyperparathyroidism, familial primary, 145000 (3);Hyperparathyroidism-jaw tumor syndrome, 145001 (3);Parathyroid adenoma with cystic changes, 145001 (3);Parathyroid carcinoma, 608266 (3).
BioGrid reports that CG11990 interacts with CG4167 .
TRiP has 2 RNAi stocks for FBgn0037657 available for purchase.
VDRC has 3 RNAi stocks for FBgn0037657 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	134 ± 2	4 of 4	1.00	None
Head	99 ± 5	4 of 4	0.70	Down
Eye	73 ± 1	4 of 4	0.54	Down
Thoracicoabdominal ganglion	129 ± 2	4 of 4	1.00	None
Salivary gland	182 ± 10	4 of 4	1.35	Up
Crop	110 ± 3	4 of 4	0.80	Down
Midgut	107 ± 5	4 of 4	0.80	Down
Tubule	95 ± 2	4 of 4	0.70	Down
Hindgut	102 ± 4	4 of 4	0.80	Down
Heart	62 ± 0	4 of 4	0.46	Down
Fat body	59 ± 4	4 of 4	0.44	Down
Ovary	224 ± 2	4 of 4	1.70	Up
Testis	84 ± 2	4 of 4	0.60	Down
Male accessory glands	175 ± 7	4 of 4	1.30	Up
Virgin spermatheca	110 ± 4	4 of 4	0.82	Down
Mated spermatheca	117 ± 9	4 of 4	0.87	None
Adult carcass	78 ± 4	4 of 4	0.60	Down
Larval CNS	245 ± 20	4 of 4	1.82	Up
Larval Salivary gland	202 ± 2	4 of 4	1.50	Up
Larval midgut	76 ± 2	4 of 4	0.56	Down
Larval tubule	118 ± 1	4 of 4	0.90	Down
Larval hindgut	119 ± 1	4 of 4	0.89	Down
Larval fat body	91 ± 4	4 of 4	0.70	Down
Larval trachea	156 ± 9	4 of 4	1.16	Up
Larval carcass	145 ± 7	4 of 4	1.07	None
S2 cells (growing)	272 ± 4	4 of 4	2.02	Up
Whole fly	135 ± 3	4 of 4

Looking for FBgn0037657. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720