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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037662 through 18771 annotations produced 1 hits


Annotation Number : CG11997
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037662
Gbrowse : chr3R:5003283-5004594 (+) // 100.0 //
Probeset : 1626409_at
Accessions : protein= NP_649867;, nucleotide= NM_141610;
FlyMine data for FBgn0037662.
TRiP has 1 RNAi stocks for FBgn0037662 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037662 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 4.20None
Head2 10 of 4 3.80None
Eye6 10 of 4 8.93Up
Thoracicoabdominal ganglion1 00 of 4 1.40None
Salivary gland3 10 of 4 4.97None
Crop3 10 of 4 5.40None
Midgut7 20 of 4 9.90None
Tubule3 00 of 4 4.40Up
Hindgut2 00 of 4 2.70None
Heart0 00 of 4 0.97None
Fat body3 30 of 4 4.62None
Ovary0 00 of 4 0.70None
Testis0 00 of 4 1.10None
Male accessory glands3 10 of 4 4.20None
Virgin spermatheca3 00 of 4 4.93Up
Mated spermatheca2 10 of 4 2.76None
Adult carcass6 20 of 4 8.40None
Larval CNS1 10 of 4 2.62None
Larval Salivary gland2 10 of 4 3.45None
Larval midgut3 10 of 4 4.76None
Larval tubule5 10 of 4 8.10Up
Larval hindgut1 00 of 4 1.66None
Larval fat body1 00 of 4 1.60None
Larval trachea2 30 of 4 3.31None
Larval carcass2 00 of 4 3.86None
S2 cells (growing)1 00 of 4 1.38None
Whole fly0 00 of 4

Looking for FBgn0037662. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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