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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037666 through 18771 annotations produced 1 hits



(CR16735):

Annotation Number : CG16735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037666
Gbrowse : chr3R:5079731-5080405 (+) // 100.0 //
Probeset : 1629105_at
Accessions : protein= NP_649871;, nucleotide= NM_141614;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037666.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 1.20None
Head4 10 of 4 1.50None
Eye4 10 of 4 1.36None
Thoracicoabdominal ganglion2 00 of 4 0.60None
Salivary gland3 10 of 4 0.97None
Crop6 11 of 4 1.80None
Midgut4 01 of 4 1.50None
Tubule3 00 of 4 1.10None
Hindgut3 00 of 4 1.10None
Heart2 00 of 4 0.90None
Fat body9 24 of 4 2.76Up
Ovary2 00 of 4 0.60None
Testis1 00 of 4 0.50None
Male accessory glands4 20 of 4 1.50None
Virgin spermatheca7 10 of 4 2.12None
Mated spermatheca7 22 of 4 2.17None
Adult carcass5 20 of 4 1.60None
Larval CNS4 01 of 4 1.33None
Larval Salivary gland3 10 of 4 1.13None
Larval midgut2 11 of 4 0.88None
Larval tubule4 11 of 4 1.20None
Larval hindgut2 00 of 4 0.75None
Larval fat body4 10 of 4 1.30None
Larval trachea0 10 of 4 0.24None
Larval carcass2 00 of 4 0.80None
S2 cells (growing)2 00 of 4 0.68None
Whole fly3 10 of 4

Looking for FBgn0037666. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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