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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037668 through 18771 annotations produced 1 hits



(CG16736):

Annotation Number : CG16736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037668
Gbrowse : chr3R:5082446-5083400 (-) // 100.0 //
Probeset : 1627469_at
Accessions : protein= NP_649873;, nucleotide= NM_141616;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0016020 // membrane // inferred
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0037668.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland6 ± 10 of 4 0.29Down
Crop1 ± 00 of 4 0.00Down
Midgut3 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.20Down
Heart4 ± 11 of 4 0.19Down
Fat body1 ± 10 of 4 0.09Down
Ovary2 ± 10 of 4 0.10Down
Testis257 ± 24 of 411.40Up
Male accessory glands3 ± 20 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.15Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS3 ± 12 of 4 0.15Down
Larval Salivary gland4 ± 10 of 4 0.20Down
Larval midgut3 ± 10 of 4 0.15Down
Larval tubule3 ± 11 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body31 ± 122 of 4 1.40None
Larval trachea2 ± 20 of 4 0.13Down
Larval carcass3 ± 00 of 4 0.14Down
S2 cells (growing)4 ± 12 of 4 0.22Down
Whole fly22 ± 14 of 4

Looking for FBgn0037668. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime