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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037670 through 18771 annotations produced 1 hits


Annotation Number : CG8436
Flybase ID : FBgn0037670
Gbrowse : chr3R:5084690-5086124 (+) // 100.0 //
Probeset : 1630527_at
Accessions : protein= NP_649875;, nucleotide= NM_141618;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037670.
BDGP gene expression has embryonic in situ data for CG8436: 12 pix of staining in 6 body parts.
BioGrid reports that CG8436 interacts with CG8612 CG9740 .
VDRC has 3 RNAi stocks for FBgn0037670 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 44 of 4 1.10None
Head71 24 of 4 0.90None
Eye74 14 of 4 0.95None
Thoracicoabdominal ganglion70 54 of 4 0.90None
Salivary gland52 24 of 4 0.67Down
Crop132 34 of 4 1.70Up
Midgut54 24 of 4 0.70Down
Tubule59 24 of 4 0.80Down
Hindgut84 24 of 4 1.10None
Heart76 24 of 4 0.98None
Fat body60 04 of 4 0.78Down
Ovary159 24 of 4 2.00Up
Testis38 24 of 4 0.50Down
Male accessory glands133 74 of 4 1.70Up
Virgin spermatheca88 84 of 4 1.14None
Mated spermatheca102 64 of 4 1.32Up
Adult carcass62 44 of 4 0.80Down
Larval CNS279 214 of 4 3.59Up
Larval Salivary gland93 74 of 4 1.20None
Larval midgut45 24 of 4 0.58Down
Larval tubule80 34 of 4 1.00None
Larval hindgut73 14 of 4 0.94None
Larval fat body57 44 of 4 0.70Down
Larval trachea156 174 of 4 2.01Up
Larval carcass74 44 of 4 0.95None
S2 cells (growing)97 54 of 4 1.26Up
Whole fly77 24 of 4

Looking for FBgn0037670. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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