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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037672 through 18771 annotations produced 2 hits



salivary gland-expressed bHLH (sage):

Annotation Number : CG12952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037672
Gbrowse : chr3R:5088382-5089464 (-) // 100.0 //
Probeset : 1634167_a_at
Accessions : protein= NP_524287; /// NP_731326;, nucleotide= NM_079563; /// NM_169263;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0037672.
BDGP gene expression has embryonic in situ data for sage: 13 pix of staining in 3 body parts.
BioGrid reports that CG12952 interacts with CG4168 .
TRiP has 1 RNAi stocks for FBgn0037672 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 34 of 4 2.70Up
Head13 21 of 4 0.90None
Eye11 22 of 4 0.81None
Thoracicoabdominal ganglion32 14 of 4 2.20Up
Salivary gland1982 204 of 4137.64Up
Crop26 43 of 4 1.80None
Midgut3 00 of 4 0.20Down
Tubule4 10 of 4 0.30Down
Hindgut2 00 of 4 0.20Down
Heart3 10 of 4 0.27Down
Fat body8 10 of 4 0.58None
Ovary3 10 of 4 0.20Down
Testis145 74 of 410.10Up
Male accessory glands28 23 of 4 2.00Up
Virgin spermatheca10 20 of 4 0.73None
Mated spermatheca8 20 of 4 0.59None
Adult carcass20 71 of 4 1.40None
Larval CNS11 30 of 4 0.80None
Larval Salivary gland3504 2634 of 4243.38Up
Larval midgut2 00 of 4 0.16Down
Larval tubule5 20 of 4 0.40Down
Larval hindgut2 00 of 4 0.19Down
Larval fat body15 30 of 4 1.10None
Larval trachea5 50 of 4 0.39None
Larval carcass5 20 of 4 0.36Down
S2 cells (growing)16 12 of 4 1.18None
Whole fly14 21 of 4



Tryptophanyl-tRNA synthetase /// salivary gland-expressed bHLH (Aats-trp /// sage):

Annotation Number : CG9735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010803
Gbrowse : chr3R:5089551-5092670 (-) // 99.52 //
Probeset : 1629619_at
Accessions : protein= NP_524826; /// NP_731327;, nucleotide= NM_080087; /// NM_169264;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // c
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transc
FlyMine data for FBgn0010803.
BioGrid reports that CG9735 interacts with CG4528 Dmel CG18350 .
VDRC has 3 RNAi stocks for FBgn0010803 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 4.40Up
Head12 13 of 4 1.00None
Eye22 04 of 4 1.83Up
Thoracicoabdominal ganglion42 34 of 4 3.50Up
Salivary gland390 874 of 432.17Up
Crop22 34 of 4 1.90Up
Midgut11 20 of 4 0.90None
Tubule9 02 of 4 0.80Down
Hindgut11 21 of 4 1.00None
Heart4 21 of 4 0.39Down
Fat body17 62 of 4 1.40None
Ovary5 11 of 4 0.40Down
Testis152 54 of 412.50Up
Male accessory glands29 34 of 4 2.40Up
Virgin spermatheca22 14 of 4 1.86Up
Mated spermatheca25 44 of 4 2.06Up
Adult carcass9 30 of 4 0.80None
Larval CNS20 64 of 4 1.71None
Larval Salivary gland4353 3604 of 4358.29Up
Larval midgut4 20 of 4 0.38None
Larval tubule6 10 of 4 0.50None
Larval hindgut9 10 of 4 0.77None
Larval fat body9 20 of 4 0.80None
Larval trachea9 23 of 4 0.78None
Larval carcass7 12 of 4 0.61None
S2 cells (growing)15 04 of 4 1.27None
Whole fly12 24 of 4

Looking for FBgn0037672. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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