FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0037672 through 18771 annotations produced 2 hits

salivary gland-expressed bHLH (sage):

Annotation Number : CG12952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037672
Gbrowse : chr3R:5088382-5089464 (-) // 100.0 //
Probeset : 1634167_a_at
Accessions : protein= NP_524287; /// NP_731326;, nucleotide= NM_079563; /// NM_169263;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0037672.
BDGP gene expression has embryonic in situ data for sage: 13 pix of staining in 3 body parts.
BioGrid reports that CG12952 interacts with CG4168 .
TRiP has 1 RNAi stocks for FBgn0037672 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	38 ± 3	4 of 4	2.70	Up
Head	13 ± 2	1 of 4	0.90	None
Eye	11 ± 2	2 of 4	0.81	None
Thoracicoabdominal ganglion	32 ± 1	4 of 4	2.20	Up
Salivary gland	1982 ± 20	4 of 4	137.64	Up
Crop	26 ± 4	3 of 4	1.80	None
Midgut	3 ± 0	0 of 4	0.20	Down
Tubule	4 ± 1	0 of 4	0.30	Down
Hindgut	2 ± 0	0 of 4	0.20	Down
Heart	3 ± 1	0 of 4	0.27	Down
Fat body	8 ± 1	0 of 4	0.58	None
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	145 ± 7	4 of 4	10.10	Up
Male accessory glands	28 ± 2	3 of 4	2.00	Up
Virgin spermatheca	10 ± 2	0 of 4	0.73	None
Mated spermatheca	8 ± 2	0 of 4	0.59	None
Adult carcass	20 ± 7	1 of 4	1.40	None
Larval CNS	11 ± 3	0 of 4	0.80	None
Larval Salivary gland	3504 ± 263	4 of 4	243.38	Up
Larval midgut	2 ± 0	0 of 4	0.16	Down
Larval tubule	5 ± 2	0 of 4	0.40	Down
Larval hindgut	2 ± 0	0 of 4	0.19	Down
Larval fat body	15 ± 3	0 of 4	1.10	None
Larval trachea	5 ± 5	0 of 4	0.39	None
Larval carcass	5 ± 2	0 of 4	0.36	Down
S2 cells (growing)	16 ± 1	2 of 4	1.18	None
Whole fly	14 ± 2	1 of 4

Tryptophanyl-tRNA synthetase /// salivary gland-expressed bHLH (Aats-trp /// sage):

Annotation Number : CG9735
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010803
Gbrowse : chr3R:5089551-5092670 (-) // 99.52 //
Probeset : 1629619_at
Accessions : protein= NP_524826; /// NP_731327;, nucleotide= NM_080087; /// NM_169264;
Pathway : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // c
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transc
FlyMine data for FBgn0010803.
BioGrid reports that CG9735 interacts with CG4528 Dmel CG18350 .
VDRC has 3 RNAi stocks for FBgn0010803 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	53 ± 1	4 of 4	4.40	Up
Head	12 ± 1	3 of 4	1.00	None
Eye	22 ± 0	4 of 4	1.83	Up
Thoracicoabdominal ganglion	42 ± 3	4 of 4	3.50	Up
Salivary gland	390 ± 87	4 of 4	32.17	Up
Crop	22 ± 3	4 of 4	1.90	Up
Midgut	11 ± 2	0 of 4	0.90	None
Tubule	9 ± 0	2 of 4	0.80	Down
Hindgut	11 ± 2	1 of 4	1.00	None
Heart	4 ± 2	1 of 4	0.39	Down
Fat body	17 ± 6	2 of 4	1.40	None
Ovary	5 ± 1	1 of 4	0.40	Down
Testis	152 ± 5	4 of 4	12.50	Up
Male accessory glands	29 ± 3	4 of 4	2.40	Up
Virgin spermatheca	22 ± 1	4 of 4	1.86	Up
Mated spermatheca	25 ± 4	4 of 4	2.06	Up
Adult carcass	9 ± 3	0 of 4	0.80	None
Larval CNS	20 ± 6	4 of 4	1.71	None
Larval Salivary gland	4353 ± 360	4 of 4	358.29	Up
Larval midgut	4 ± 2	0 of 4	0.38	None
Larval tubule	6 ± 1	0 of 4	0.50	None
Larval hindgut	9 ± 1	0 of 4	0.77	None
Larval fat body	9 ± 2	0 of 4	0.80	None
Larval trachea	9 ± 2	3 of 4	0.78	None
Larval carcass	7 ± 1	2 of 4	0.61	None
S2 cells (growing)	15 ± 0	4 of 4	1.27	None
Whole fly	12 ± 2	4 of 4

Looking for FBgn0037672. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720