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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0037676 through 18771 annotations produced 1 hits


Annotation Number : CG8861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037676
Gbrowse : chr3R:5120654-5154227 (-) // 100.0 //
Probeset : 1637076_at
Accessions : protein= NP_001163567; /// NP_649879;, nucleotide= NM_001170096; /// NM_141622;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037676.
BDGP gene expression has embryonic in situ data for CG8861: 14 pix of staining in 4 body parts.
BioGrid reports that CG8861 interacts with CG9911 .
TRiP has 1 RNAi stocks for FBgn0037676 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037676 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain326 84 of 432.60Up
Head89 84 of 4 9.00Up
Eye138 94 of 413.81Up
Thoracicoabdominal ganglion524 154 of 452.40Up
Salivary gland7 40 of 4 0.73None
Crop1 00 of 4 0.10None
Midgut1 00 of 4 0.10None
Tubule2 00 of 4 0.20Down
Hindgut0 00 of 4 0.10None
Heart2 10 of 4 0.23None
Fat body2 10 of 4 0.25None
Ovary1 00 of 4 0.10None
Testis1 00 of 4 0.10None
Male accessory glands6 00 of 4 0.70None
Virgin spermatheca7 20 of 4 0.71None
Mated spermatheca9 20 of 4 0.98None
Adult carcass4 10 of 4 0.40None
Larval CNS98 104 of 4 9.90Up
Larval Salivary gland0 00 of 4 0.06None
Larval midgut1 00 of 4 0.13None
Larval tubule2 10 of 4 0.30None
Larval hindgut0 00 of 4 0.08None
Larval fat body1 00 of 4 0.20None
Larval trachea1 20 of 4 0.17None
Larval carcass0 00 of 4 0.09None
S2 cells (growing)0 00 of 4 0.07None
Whole fly10 30 of 4

Looking for FBgn0037676. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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