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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037680 through 18771 annotations produced 1 hits



(CG8121):

Annotation Number : CG8121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037680
Gbrowse : chr3R:5160896-5162987 (+) // 100.0 //
Probeset : 1624415_s_at
Accessions : protein= NP_649883; /// NP_731333; /// NP_731334;, nucleotide= NM_141626; /// NM_169266; /// NM_169267;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037680.
VDRC has 3 RNAi stocks for FBgn0037680 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 44 of 4 0.70Down
Head180 54 of 4 0.90None
Eye229 54 of 4 1.14Up
Thoracicoabdominal ganglion97 24 of 4 0.50Down
Salivary gland301 114 of 4 1.50Up
Crop527 224 of 4 2.60Up
Midgut17 10 of 4 0.10Down
Tubule23 33 of 4 0.10Down
Hindgut305 134 of 4 1.50Up
Heart61 34 of 4 0.31Down
Fat body43 44 of 4 0.21Down
Ovary438 124 of 4 2.20Up
Testis58 34 of 4 0.30Down
Male accessory glands527 194 of 4 2.60Up
Virgin spermatheca241 174 of 4 1.21None
Mated spermatheca400 544 of 4 2.00Up
Adult carcass118 104 of 4 0.60Down
Larval CNS126 124 of 4 0.63Down
Larval Salivary gland240 154 of 4 1.20None
Larval midgut21 34 of 4 0.11Down
Larval tubule13 23 of 4 0.10Down
Larval hindgut270 54 of 4 1.35Up
Larval fat body116 114 of 4 0.60Down
Larval trachea739 564 of 4 3.69Up
Larval carcass251 194 of 4 1.25None
S2 cells (growing)238 44 of 4 1.19Up
Whole fly200 84 of 4

Looking for FBgn0037680. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime