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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037684 through 18771 annotations produced 1 hits



(CG8129):

Annotation Number : CG8129
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037684
Gbrowse : chr3R:5191141-5193488 (+) // 100.0 //
Probeset : 1637971_a_at
Accessions : protein= NP_649886; /// NP_731340;, nucleotide= NM_141629; /// NM_169273;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004794 // L-threonine ammonia-lyase activity /
FlyMine data for FBgn0037684.
BDGP gene expression has embryonic in situ data for CG8129: 24 pix of staining in 2 body parts.
BioGrid reports that CG8129 interacts with CG8129 .
VDRC has 5 RNAi stocks for FBgn0037684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 0.10Down
Head120 ± 114 of 4 1.00None
Eye55 ± 104 of 4 0.47Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland9 ± 30 of 4 0.08Down
Crop17 ± 20 of 4 0.10Down
Midgut88 ± 114 of 4 0.70None
Tubule48 ± 33 of 4 0.40Down
Hindgut58 ± 64 of 4 0.50Down
Heart449 ± 334 of 4 3.79Up
Fat body928 ± 784 of 4 7.83Up
Ovary3 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca2535 ± 2464 of 421.36Up
Mated spermatheca1879 ± 2044 of 415.84Up
Adult carcass480 ± 264 of 4 4.10Up
Larval CNS8 ± 10 of 4 0.07Down
Larval Salivary gland4 ± 10 of 4 0.04Down
Larval midgut480 ± 224 of 4 4.05Up
Larval tubule21 ± 13 of 4 0.20Down
Larval hindgut99 ± 64 of 4 0.84None
Larval fat body593 ± 584 of 4 5.00Up
Larval trachea5 ± 50 of 4 0.05Down
Larval carcass7 ± 10 of 4 0.06Down
S2 cells (growing)6 ± 10 of 4 0.06Down
Whole fly118 ± 134 of 4

Looking for FBgn0037684. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime