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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037688 through 18771 annotations produced 1 hits



(CG9356):

Annotation Number : CG9356
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037688
Gbrowse : chr3R:5228285-5229991 (-) // 100.0 //
Probeset : 1629472_s_at
Accessions : protein= NP_649889; /// NP_731347;, nucleotide= NM_141632; /// NM_169278;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037688.
VDRC has 1 RNAi stocks for FBgn0037688 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 24 of 4 0.90Down
Head81 44 of 4 0.90None
Eye136 24 of 4 1.53Up
Thoracicoabdominal ganglion66 34 of 4 0.70Down
Salivary gland172 124 of 4 1.93Up
Crop75 54 of 4 0.80None
Midgut73 24 of 4 0.80Down
Tubule52 14 of 4 0.60Down
Hindgut55 24 of 4 0.60Down
Heart53 34 of 4 0.60Down
Fat body65 114 of 4 0.73Down
Ovary126 34 of 4 1.40Up
Testis99 34 of 4 1.10Up
Male accessory glands269 104 of 4 3.00Up
Virgin spermatheca79 24 of 4 0.89Down
Mated spermatheca81 34 of 4 0.91None
Adult carcass75 74 of 4 0.80None
Larval CNS61 24 of 4 0.69Down
Larval Salivary gland322 234 of 4 3.61Up
Larval midgut89 64 of 4 1.00None
Larval tubule104 54 of 4 1.20None
Larval hindgut71 34 of 4 0.79Down
Larval fat body120 94 of 4 1.40Up
Larval trachea87 64 of 4 0.98None
Larval carcass80 54 of 4 0.90None
S2 cells (growing)63 24 of 4 0.71Down
Whole fly89 24 of 4

Looking for FBgn0037688. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime