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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037689 through 18771 annotations produced 1 hits



/// (CG42511 /// CG8135):

Annotation Number : CG8135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037689 /// FBgn0260237
Gbrowse : chr3R:5230096-5233579 (+) // 100.0 //
Probeset : 1629632_at
Accessions : protein= NP_001163568; /// NP_649890;, nucleotide= NM_001170097; /// NM_141633;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0037689 /// FBgn0260237.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 74 of 4 3.90Up
Head96 64 of 4 1.40Up
Eye107 44 of 4 1.56Up
Thoracicoabdominal ganglion246 54 of 4 3.60Up
Salivary gland148 174 of 4 2.15Up
Crop61 34 of 4 0.90None
Midgut60 24 of 4 0.90Down
Tubule112 24 of 4 1.60Up
Hindgut58 24 of 4 0.80Down
Heart48 24 of 4 0.71Down
Fat body46 64 of 4 0.67Down
Ovary97 34 of 4 1.40Up
Testis205 64 of 4 3.00Up
Male accessory glands201 94 of 4 2.90Up
Virgin spermatheca51 24 of 4 0.75Down
Mated spermatheca51 74 of 4 0.74None
Adult carcass52 54 of 4 0.80None
Larval CNS144 54 of 4 2.09Up
Larval Salivary gland194 114 of 4 2.82Up
Larval midgut128 64 of 4 1.86Up
Larval tubule127 54 of 4 1.80Up
Larval hindgut97 54 of 4 1.41Up
Larval fat body100 84 of 4 1.50Up
Larval trachea80 94 of 4 1.17None
Larval carcass108 44 of 4 1.57Up
S2 cells (growing)150 44 of 4 2.18Up
Whole fly69 14 of 4

Looking for FBgn0037689. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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