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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037698 through 18771 annotations produced 1 hits



(CG16779):

Annotation Number : CG16779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037698
Gbrowse : chr3R:5292211-5301505 (-) // 100.0 //
Probeset : 1641571_at
Accessions : protein= NP_649896;, nucleotide= NM_141639;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0037698.
Homophila reports that CG16779 is a close match (8e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
VDRC has 4 RNAi stocks for FBgn0037698 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 9.40Up
Head2 ± 00 of 4 1.50Up
Eye3 ± 10 of 4 1.84None
Thoracicoabdominal ganglion8 ± 12 of 4 5.10Up
Salivary gland8 ± 30 of 4 5.03None
Crop2 ± 00 of 4 1.50None
Midgut1 ± 10 of 4 0.90None
Tubule2 ± 00 of 4 1.30None
Hindgut1 ± 00 of 4 0.90None
Heart2 ± 10 of 4 1.28None
Fat body2 ± 10 of 4 1.35None
Ovary1 ± 00 of 4 1.00None
Testis2 ± 00 of 4 1.30None
Male accessory glands0 ± 00 of 4 0.50None
Virgin spermatheca3 ± 00 of 4 1.75None
Mated spermatheca3 ± 10 of 4 2.28None
Adult carcass2 ± 00 of 4 1.60None
Larval CNS2 ± 10 of 4 1.59None
Larval Salivary gland1 ± 00 of 4 0.76None
Larval midgut2 ± 10 of 4 1.57None
Larval tubule2 ± 00 of 4 1.30None
Larval hindgut1 ± 00 of 4 0.88None
Larval fat body1 ± 00 of 4 0.60None
Larval trachea1 ± 20 of 4 0.97None
Larval carcass3 ± 10 of 4 2.21None
S2 cells (growing)2 ± 00 of 4 1.26None
Whole fly1 ± 00 of 4

Looking for FBgn0037698. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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