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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037703 through 18771 annotations produced 2 hits



(CG8165):

Annotation Number : CG8165
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037703
Gbrowse : chr3R:5341730-5346660 (+) // 100.0 //
Probeset : 1636540_at
Accessions : protein= NP_788611;, nucleotide= NM_176434;
FlyMine data for FBgn0037703.
Homophila reports that CG8165 is a close match (7e-16) to human gene AU;HR (NP_060881), a gene associated with Alopecia universalis, 203655 (3);Atrichia with papular lesions, 209500 (3).
TRiP has 1 RNAi stocks for FBgn0037703 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 54 of 4 3.10Up
Head32 ± 14 of 4 1.10None
Eye24 ± 24 of 4 0.83None
Thoracicoabdominal ganglion94 ± 34 of 4 3.10Up
Salivary gland20 ± 30 of 4 0.69None
Crop34 ± 10 of 4 1.20None
Midgut34 ± 10 of 4 1.10None
Tubule56 ± 44 of 4 1.90Up
Hindgut45 ± 14 of 4 1.50Up
Heart34 ± 24 of 4 1.14None
Fat body26 ± 30 of 4 0.88None
Ovary35 ± 24 of 4 1.20None
Testis7 ± 00 of 4 0.30Down
Male accessory glands19 ± 41 of 4 0.70None
Virgin spermatheca31 ± 32 of 4 1.04None
Mated spermatheca29 ± 13 of 4 0.97None
Adult carcass27 ± 31 of 4 0.90None
Larval CNS101 ± 124 of 4 3.40Up
Larval Salivary gland28 ± 23 of 4 0.96None
Larval midgut40 ± 42 of 4 1.34None
Larval tubule63 ± 44 of 4 2.10Up
Larval hindgut36 ± 21 of 4 1.22None
Larval fat body34 ± 32 of 4 1.10None
Larval trachea27 ± 14 of 4 0.92None
Larval carcass44 ± 34 of 4 1.49Up
S2 cells (growing)90 ± 34 of 4 3.01Up
Whole fly29 ± 34 of 4



/// (CG8165 /// CG8176):

Annotation Number : CG8176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037702
Gbrowse : chr3R:5341757-5352959 (+) // 100.0 //
Probeset : 1630227_a_at
Accessions : protein= NP_001097723; /// NP_001097724; /// NP_788612; /// NP_788613;, nucleotide= NM_001104253; /// NM_001104254; /// NM_176435; /// NM_176436;
Pathway : 0030131 // clathrin adaptor complex // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0037702.
VDRC has 2 RNAi stocks for FBgn0037702 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain452 ± 64 of 4 2.30Up
Head212 ± 74 of 4 1.10None
Eye125 ± 24 of 4 0.65Down
Thoracicoabdominal ganglion483 ± 74 of 4 2.50Up
Salivary gland190 ± 74 of 4 0.98None
Crop150 ± 54 of 4 0.80Down
Midgut117 ± 64 of 4 0.60Down
Tubule115 ± 34 of 4 0.60Down
Hindgut221 ± 104 of 4 1.10None
Heart164 ± 74 of 4 0.85None
Fat body108 ± 124 of 4 0.56Down
Ovary426 ± 74 of 4 2.20Up
Testis279 ± 144 of 4 1.40Up
Male accessory glands107 ± 54 of 4 0.60Down
Virgin spermatheca80 ± 64 of 4 0.41Down
Mated spermatheca98 ± 94 of 4 0.51Down
Adult carcass128 ± 24 of 4 0.70Down
Larval CNS326 ± 384 of 4 1.68Up
Larval Salivary gland217 ± 184 of 4 1.12None
Larval midgut236 ± 174 of 4 1.22None
Larval tubule383 ± 244 of 4 2.00Up
Larval hindgut229 ± 44 of 4 1.18None
Larval fat body281 ± 154 of 4 1.50Up
Larval trachea94 ± 104 of 4 0.49Down
Larval carcass123 ± 64 of 4 0.63Down
S2 cells (growing)306 ± 44 of 4 1.58Up
Whole fly194 ± 144 of 4

Looking for FBgn0037703. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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