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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037705 through 18771 annotations produced 2 hits



murashka (mura):

Annotation Number : LD20464
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260722
Gbrowse : chr3R:5373818-5375534 (-) // 98.56 //
Probeset : 1627248_at
Accessions : protein= , nucleotide= NR_033164; /// NR_033165; /// NR_033166; /// NR_033167;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0260722.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 44 of 4 1.80Up
Head39 24 of 4 0.70None
Eye27 44 of 4 0.50Down
Thoracicoabdominal ganglion43 44 of 4 0.80None
Salivary gland122 54 of 4 2.28Up
Crop46 34 of 4 0.90None
Midgut67 44 of 4 1.30None
Tubule79 124 of 4 1.50Up
Hindgut49 34 of 4 0.90None
Heart60 24 of 4 1.13None
Fat body50 94 of 4 0.93None
Ovary97 44 of 4 1.80Up
Testis19 34 of 4 0.40Down
Male accessory glands153 54 of 4 2.90Up
Virgin spermatheca63 74 of 4 1.18None
Mated spermatheca67 34 of 4 1.25None
Adult carcass37 54 of 4 0.70None
Larval CNS162 104 of 4 3.03Up
Larval Salivary gland258 224 of 4 4.81Up
Larval midgut66 124 of 4 1.24None
Larval tubule247 134 of 4 4.60Up
Larval hindgut106 84 of 4 1.99Up
Larval fat body112 164 of 4 2.10Up
Larval trachea47 64 of 4 0.89None
Larval carcass120 194 of 4 2.25Up
S2 cells (growing)104 34 of 4 1.95Up
Whole fly53 54 of 4



murashka (mura):

Annotation Number : CG9381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037705
Gbrowse : chr3R:5363654-5377528 (-) // 100.0 //
Probeset : 1633534_s_at
Accessions : protein= NP_649902; /// NP_731366; /// NP_731367;, nucleotide= NM_141645; /// NM_169291; /// NM_169292;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0037705.
BDGP gene expression has embryonic in situ data for CG9381: 4 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0037705 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 144 of 4 8.40Up
Head52 24 of 4 1.40Up
Eye272 234 of 4 7.40Up
Thoracicoabdominal ganglion265 64 of 4 7.20Up
Salivary gland88 264 of 4 2.39None
Crop140 94 of 4 3.80Up
Midgut77 44 of 4 2.10Up
Tubule64 34 of 4 1.80Up
Hindgut91 34 of 4 2.50Up
Heart304 224 of 4 8.27Up
Fat body82 44 of 4 2.25Up
Ovary56 34 of 4 1.50Up
Testis13 04 of 4 0.40Down
Male accessory glands63 74 of 4 1.70Up
Virgin spermatheca150 114 of 4 4.07Up
Mated spermatheca144 214 of 4 3.93Up
Adult carcass61 54 of 4 1.70Up
Larval CNS138 314 of 4 3.75Up
Larval Salivary gland33 14 of 4 0.92None
Larval midgut106 94 of 4 2.88Up
Larval tubule129 64 of 4 3.50Up
Larval hindgut91 64 of 4 2.49Up
Larval fat body86 94 of 4 2.30Up
Larval trachea342 264 of 4 9.29Up
Larval carcass65 64 of 4 1.78Up
S2 cells (growing)80 24 of 4 2.18Up
Whole fly36 04 of 4

Looking for FBgn0037705. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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