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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037707 through 18771 annotations produced 1 hits



chr3R:5377764-5379469 (+) // 100.0 // (RRM-domain protein):

Annotation Number : CG16788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633915_at
Accessions : protein= , nucleotide= NP_649903;
Pathway : "0000184 // nuclear-transcribed mRNA catabolic process
Interpro : nonsense-mediated decay // non-traceable author statement"
FlyMine data for full length.
BioGrid reports that CG16788 interacts with CG32016 CG3978 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 44 of 4 0.90None
Head114 74 of 4 0.40Down
Eye85 64 of 4 0.33Down
Thoracicoabdominal ganglion216 34 of 4 0.80Down
Salivary gland102 44 of 4 0.40Down
Crop113 44 of 4 0.40Down
Midgut87 24 of 4 0.30Down
Tubule91 64 of 4 0.40Down
Hindgut99 14 of 4 0.40Down
Heart73 34 of 4 0.28Down
Fat body90 104 of 4 0.35Down
Ovary535 64 of 4 2.10Up
Testis299 114 of 4 1.20Up
Male accessory glands178 74 of 4 0.70Down
Virgin spermatheca69 34 of 4 0.27Down
Mated spermatheca76 34 of 4 0.30Down
Adult carcass112 54 of 4 0.40Down
Larval CNS626 414 of 4 2.43Up
Larval Salivary gland270 44 of 4 1.05None
Larval midgut67 24 of 4 0.26Down
Larval tubule82 34 of 4 0.30Down
Larval hindgut135 114 of 4 0.53Down
Larval fat body102 124 of 4 0.40Down
Larval trachea244 364 of 4 0.95None
Larval carcass172 34 of 4 0.67Down
S2 cells (growing)295 74 of 4 1.15Up
Whole fly257 94 of 4

Looking for FBgn0037707. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime