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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037708 through 18771 annotations produced 1 hits



(CG9386):

Annotation Number : CG9386
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037708
Gbrowse : chr3R:5379410-5381102 (-) // 100.0 //
Probeset : 1631807_at
Accessions : protein= NP_649904;, nucleotide= NM_141647;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0037708.
BDGP gene expression has embryonic in situ data for CG9386: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0037708 available for purchase.
VDRC has 4 RNAi stocks for FBgn0037708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain81 ± 04 of 4 1.60Up
Head58 ± 24 of 4 1.10None
Eye59 ± 24 of 4 1.16None
Thoracicoabdominal ganglion95 ± 64 of 4 1.90Up
Salivary gland61 ± 34 of 4 1.21Up
Crop61 ± 14 of 4 1.20Up
Midgut45 ± 04 of 4 0.90None
Tubule83 ± 24 of 4 1.60Up
Hindgut55 ± 34 of 4 1.10None
Heart54 ± 44 of 4 1.06None
Fat body67 ± 34 of 4 1.33Up
Ovary68 ± 34 of 4 1.30Up
Testis11 ± 14 of 4 0.20Down
Male accessory glands78 ± 34 of 4 1.50Up
Virgin spermatheca99 ± 14 of 4 1.95Up
Mated spermatheca125 ± 24 of 4 2.46Up
Adult carcass60 ± 34 of 4 1.20None
Larval CNS87 ± 24 of 4 1.71Up
Larval Salivary gland84 ± 54 of 4 1.66Up
Larval midgut46 ± 24 of 4 0.92None
Larval tubule76 ± 34 of 4 1.50Up
Larval hindgut60 ± 24 of 4 1.19Up
Larval fat body48 ± 44 of 4 1.00None
Larval trachea99 ± 34 of 4 1.96Up
Larval carcass48 ± 34 of 4 0.96None
S2 cells (growing)60 ± 44 of 4 1.19None
Whole fly51 ± 24 of 4

Looking for FBgn0037708. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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