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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0037710 through 18771 annotations produced 1 hits



(CG9393):

Annotation Number : CG9393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037710
Gbrowse : chr3R:5387301-5389392 (-) // 100.0 //
Probeset : 1633940_at
Accessions : protein= NP_649908;, nucleotide= NM_141651;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037710.
BDGP gene expression has embryonic in situ data for CG9393: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0037710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 34 of 4 0.50Down
Head65 ± 24 of 4 0.30Down
Eye46 ± 24 of 4 0.20Down
Thoracicoabdominal ganglion98 ± 14 of 4 0.40Down
Salivary gland94 ± 24 of 4 0.41Down
Crop97 ± 34 of 4 0.40Down
Midgut93 ± 34 of 4 0.40Down
Tubule94 ± 34 of 4 0.40Down
Hindgut84 ± 24 of 4 0.40Down
Heart91 ± 84 of 4 0.40Down
Fat body84 ± 114 of 4 0.37Down
Ovary371 ± 104 of 4 1.60Up
Testis604 ± 184 of 4 2.60Up
Male accessory glands118 ± 24 of 4 0.50Down
Virgin spermatheca58 ± 24 of 4 0.25Down
Mated spermatheca69 ± 24 of 4 0.30Down
Adult carcass60 ± 34 of 4 0.30Down
Larval CNS144 ± 74 of 4 0.63Down
Larval Salivary gland212 ± 174 of 4 0.92None
Larval midgut88 ± 74 of 4 0.38Down
Larval tubule161 ± 104 of 4 0.70Down
Larval hindgut146 ± 44 of 4 0.63Down
Larval fat body601 ± 314 of 4 2.60Up
Larval trachea103 ± 174 of 4 0.45Down
Larval carcass238 ± 574 of 4 1.03None
S2 cells (growing)184 ± 14 of 4 0.80Down
Whole fly231 ± 124 of 4

Looking for FBgn0037710. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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